jV runs on the Java Runtime Environment ( JRE) so that it can work as a stand-alone application as well as an applet.(Each frame of an animation is made of a single MODEL entity of the traditional PDB format file.) Multiple polygons can be processed simultaneously, and be superimposed onto molecular images.jV can display polygons specified by XML.jV can process more than one molecules.Of course, jV can read and display the traditional PDB format files, too.jV can read and display PDBML files, the canonical XML format for the Protein Data Bank.PDBjViewer (jV, for short) is a program to display molecular graphics of proteins and nucleic acids.
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